2ITV Transferase date May 25, 2006
title Crystal Structure Of Egfr Kinase Domain L858r Mutation In Co Amp-Pnp
authors C.H.Yun, T.J.Boggon, Y.Li, S.Woo, H.Greulich, M.Meyerson, M.J.Eck
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Kinase Domain, Residues 696-1022
Synonym: Receptor, Tyrosine-Protein Kinase Erbb-1
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacg2t
symmetry Space Group: I 2 3
R_factor 0.195 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.081 145.081 145.081 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.47 Å
ligand ANP enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of lung cancer-derived EGFR mutants and inhibitor complexes: mechanism of activation and insights into differential inhibitor sensitivity., Yun CH, Boggon TJ, Li Y, Woo MS, Greulich H, Meyerson M, Eck MJ, Cancer Cell. 2007 Mar;11(3):217-27. PMID:17349580
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2itv.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2ITV
  • CSU: Contacts of Structural Units for 2ITV
  • Likely Quarternary Molecular Structure file(s) for 2ITV
  • Structure Factors (259 Kb)
  • Retrieve 2ITV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ITV from S2C, [Save to disk]
  • Re-refined 2itv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ITV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ITV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ITV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2itv] [2itv_A]
  • SWISS-PROT database: [P00533]
  • Domain organization of [EGFR_HUMAN] by SWISSPFAM
  • Domain found in 2ITV: [TyrKc ] by SMART
  • Other resources with information on 2ITV
  • Community annotation for 2ITV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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