2IUJ Oxidoreductase date Jun 05, 2006
title Crystal Structure Of Soybean Lipoxygenase-B
authors B.Youn, G.E.Sellhorn, R.J.Mirchel, B.J.Gaffney, H.D.Grimes, C.Kan
compound source
Molecule: Lipoxygenase L-5
Chain: A
Synonym: Vegetative Lipoxygenase-B
Engineered: Yes
 Organism_scientific: Glycine Max
Organism_common: Soybean
Organism_taxid: 3847
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.050 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.990 105.310 105.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand FE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of vegetative soybean lipoxygenase VLX-B and VLX-D, and comparisons with seed isoforms LOX-1 and LOX-3., Youn B, Sellhorn GE, Mirchel RJ, Gaffney BJ, Grimes HD, Kang C, Proteins. 2006 Dec 1;65(4):1008-20. PMID:17022084
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (2iuj.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 2IUJ
  • CSU: Contacts of Structural Units for 2IUJ
  • Likely Quarternary Molecular Structure file(s) for 2IUJ
  • Retrieve 2IUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IUJ from S2C, [Save to disk]
    • View 2IUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2IUJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IUJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2iuj] [2iuj_A]
  • SWISS-PROT database: [Q43446]
  • Domain organization of [Q43446_SOYBN] by SWISSPFAM
  • Domain found in 2IUJ: [LH2 ] by SMART
    • Other resources with information on 2IUJ
  • Community annotation for 2IUJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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