2IVF Oxidoreductase date Jun 13, 2006
title Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
authors D.P.Kloer, C.Hagel, J.Heider, G.E.Schulz
compound source
Molecule: Ethylbenzene Dehydrogenase Alpha-Subunit
Chain: A
Ec: 1.17.99.2
Organism_scientific: Aromatoleum Aromaticum
Organism_taxid: 76114
Strain: Ebn1
Other_details: Azoarcus Sp. Ebn1 Renamed To Aromatoleum Aro

Molecule: Ethylbenzene Dehydrogenase Beta-Subunit
Chain: B
Ec: 1.17.99.2

Organism_scientific: Aromatoleum Aromaticum
Organism_taxid: 76114
Strain: Ebn1
Other_details: Azoarcus Sp. Ebn1 Renamed To Aromatoleum Aro

Molecule: Ethylbenzene Dehydrogenase Gamma-Subunit
Chain: C
Ec: 1.17.99.2

Organism_scientific: Aromatoleum Aromaticum
Organism_taxid: 76114
Strain: Ebn1
Other_details: Azoarcus Sp. Ebn1 Renamed To Aromatoleum Aro
symmetry Space Group: P 1 21 1
R_factor 0.148 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.532 67.324 114.765 90.00 111.30 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand ACT, F3S, GOL, HEM, MD1, MES, MGD, MO, PO4, SF4 enzyme Oxidoreductase E.C.1.17.99.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceCrystal structure of ethylbenzene dehydrogenase from Aromatoleum aromaticum., Kloer DP, Hagel C, Heider J, Schulz GE, Structure. 2006 Sep;14(9):1377-88. PMID:16962969
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (2ivf.pdb1.gz) 254 Kb
  • LPC: Ligand-Protein Contacts for 2IVF
  • CSU: Contacts of Structural Units for 2IVF
  • Likely Quarternary Molecular Structure file(s) for 2IVF
  • Structure Factors (986 Kb)
  • Retrieve 2IVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IVF from S2C, [Save to disk]
  • Re-refined 2ivf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IVF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IVF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ivf] [2ivf_C] [2ivf_B] [2ivf_A]
  • SWISS-PROT database: [Q5P5I0] [Q5P5I1] [Q5P5I2]
  • Domain organization of [Q5P5I0_AZOSE] [Q5P5I1_AZOSE] [Q5P5I2_AZOSE] by SWISSPFAM
  • Domain found in 2IVF: [EB_dh ] by SMART
  • Other resources with information on 2IVF
  • Community annotation for 2IVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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