2IVU	Transferase	date	Jun 16, 2006
title	Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Doma Complexed With The Inhibitor Zd6474
authors	P.P.Knowles, J.Murray-Rust, N.Q.Mcdonald
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Receptor R Precursor; Chain: A Fragment: Tyrosine Kinase Domain, Residues 705-1013 Synonym: Ret Receptor, C-Ret Ec: 2.7.10.1 Engineered: Yes Other_details: Ptr At 905		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pbacpak-His3
symmetry	Space Group: C 1 2 1	R_factor 0.190 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.409 71.420 78.834 90.00 101.23 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	FMT, PTR, ZD6	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and chemical inhibition of the RET tyrosine kinase domain., Knowles PP, Murray-Rust J, Kjaer S, Scott RP, Hanrahan S, Santoro M, Ibanez CF, McDonald NQ, J Biol Chem. 2006 Nov 3;281(44):33577-87. Epub 2006 Aug 23. PMID:16928683

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (2ivu.pdb1.gz) 92 Kb LPC: Ligand-Protein Contacts for 2IVU CSU: Contacts of Structural Units for 2IVU Likely Quarternary Molecular Structure file(s) for 2IVU Retrieve 2IVU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2IVU from S2C, [Save to disk]

View 2IVU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2IVU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2IVU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ivu] [2ivu_A] SWISS-PROT database: [P07949] Domain organization of [RET_HUMAN] by SWISSPFAM Domain found in 2IVU: [TyrKc ] by SMART

Other resources with information on 2IVU

Community annotation for 2IVU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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