OCA Atlas for 2IX3

2IX3

Translation

date

Jul 06, 2006

title

Structure Of Yeast Elongation Factor 3

authors

C.B.F.Andersen, T.Becker, M.Blau, M.Anand, M.Halic, B.Balar, T.Mielke, T.Boesen, J.S.Pedersen, C.M.T.Spahn, T.G.Kinzy, G.R.Andersen, R.Beckmann

compound

source

Molecule: Elongation Factor 3
Chain: A, B
Fragment: Residues 1-980
Synonym: Ef-3a, Ef-3, Translation Elongation Factor 3a, Eukaryotic Elongation Factor 3, Eef3, Yeast Elongation Factor 3;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

symmetry

Space Group: P 21 21 21

R_factor

0.216

R_Free

0.269

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
97.610	110.660	212.650	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

2.7 Å

ligand

SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Structure of eEF3 and the mechanism of transfer RNA release from the E-site., Andersen CB, Becker T, Blau M, Anand M, Halic M, Balar B, Mielke T, Boesen T, Pedersen JS, Spahn CM, Kinzy TG, Andersen GR, Beckmann R, Nature. 2006 Oct 12;443(7112):663-8. Epub 2006 Aug 23. PMID:16929303

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]

Biological Unit Coordinates (2ix3.pdb1.gz) 305 Kb

LPC: Ligand-Protein Contacts for 2IX3

CSU: Contacts of Structural Units for 2IX3

Likely Quarternary Molecular Structure file(s) for 2IX3

Structure Factors (576 Kb)

Retrieve 2IX3 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2IX3 from S2C, [Save to disk]

Re-refined 2ix3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2IX3 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2IX3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2IX3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ix3_B] [2ix3] [2ix3_A]

SWISS-PROT database: [P16521]

Domain organization of [EF3A_YEAST] by SWISSPFAM

Domain found in 2IX3: [AAA ] by SMART

Other resources with information on 2IX3

Community annotation for 2IX3 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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