2IX5 Oxidoreductase date Jul 07, 2006
title Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thali In Complex With Acetoacetyl-Coa
authors J.Mackenzie, L.Pedersen, S.Arent, A.Henriksen
compound source
Molecule: Acyl-Coenzyme A Oxidase 4, Peroxisomal
Chain: A, B, C, D
Synonym: Acyl-Coa Oxidase, Aox 4, Short- Chain Acyl-Coa Oxi Saox, Atcx4, G6p, Atg6;
Ec: 1.3.3.6
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet24a
Other_details: Arabidopsis Biological Resource Center
symmetry Space Group: P 32 2 1
R_factor 0.186 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.747 144.747 149.208 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand CAA, FAD enzyme Oxidoreductase E.C.1.3.3.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceControlling electron transfer in Acyl-CoA oxidases and dehydrogenases: a structural view., Mackenzie J, Pedersen L, Arent S, Henriksen A, J Biol Chem. 2006 Oct 13;281(41):31012-20. Epub 2006 Aug 3. PMID:16887802
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (2ix5.pdb1.gz) 256 Kb
  • LPC: Ligand-Protein Contacts for 2IX5
  • CSU: Contacts of Structural Units for 2IX5
  • Likely Quarternary Molecular Structure file(s) for 2IX5
  • Structure Factors (710 Kb)
  • Retrieve 2IX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IX5 from S2C, [Save to disk]
  • Re-refined 2ix5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IX5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IX5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ix5_D] [2ix5_C] [2ix5] [2ix5_A] [2ix5_B]
  • SWISS-PROT database: [Q96329]
  • Domain organization of [ACOX4_ARATH] by SWISSPFAM
  • Other resources with information on 2IX5
  • Community annotation for 2IX5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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