2IX8	Nucleotide-Binding	date	Jul 07, 2006
title	Model For Eef3 Bound To An 80s Ribosome
authors	C.B.F.Andersen, T.Becker, M.Blau, M.Anand, M.Halic, B.Balar, T.Mie T.Boesen, J.S.Pedersen, C.M.T.Spahn, T.G.Kinzy, G.R.Andersen, R.
compound		source
Molecule: Elongation Factor 3a Chain: A Fragment: Residues 1-976 Synonym: Ef-3a, Ef-3, Translation Elongation Factor 3a, Euk Elongation Factor 3, Eef3, Yeast Elongation Factor 3; Engineered: Yes Other_details: Translation Elongation In Fungi Abc-Type Atp Release		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 Expression_system_strain: Wcga Expression_system_plasmid: Pyes2.1-Topo
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	6.00 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of eEF3 and the mechanism of transfer RNA release from the E-site., Andersen CB, Becker T, Blau M, Anand M, Halic M, Balar B, Mielke T, Boesen T, Pedersen JS, Spahn CM, Kinzy TG, Andersen GR, Beckmann R, Nature. 2006 Oct 12;443(7112):663-8. Epub 2006 Aug 23. PMID:16929303

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk] Biological Unit Coordinates (2ix8.pdb1.gz) 152 Kb LPC: Ligand-Protein Contacts for 2IX8 CSU: Contacts of Structural Units for 2IX8 Likely Quarternary Molecular Structure file(s) for 2IX8 Retrieve 2IX8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2IX8 from S2C, [Save to disk]

View 2IX8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2IX8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2IX8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ix8] [2ix8_A] SWISS-PROT database: [P16521] Domain organization of [EF3A_YEAST] by SWISSPFAM Domain found in 2IX8: [AAA ] by SMART

Other resources with information on 2IX8

Community annotation for 2IX8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---