2IZ9 Virus Rna date Jul 25, 2006
title Ms2-Rna Hairpin (4one -5) Complex
authors E.Grahn, N.J.Stonehouse, C.J.Adams, K.Fridborg, L.Beigelman, J.Ma Adamic, S.L.Warriner, P.G.Stockley, L.Liljas
compound source
Molecule: Ms2 Coat Protein
Chain: A, B, C
Engineered: Yes
Organism_scientific: Enterobacterio Phage Ms2
Organism_taxid: 12022
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-R(Apcpapupgpapgpgpapu Onep Apcpcpcpapupgpu)-3';
Chain: R, S
Engineered: Yes
Other_details: Coat Protein-Binding Hairpin

Synthetic: Yes
Organism_scientific: Enterobacterio Phage Ms2
Organism_taxid: 12022
symmetry Space Group: H 3 2
R_factor 0.200 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
288.000 288.000 653.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand ONE enzyme
note 2IZ9 supersedes 1DZS
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDeletion of a single hydrogen bonding atom from the MS2 RNA operator leads to dramatic rearrangements at the RNA-coat protein interface., Grahn E, Stonehouse NJ, Adams CJ, Fridborg K, Beigelman L, Matulic-Adamic J, Warriner SL, Stockley PG, Liljas L, Nucleic Acids Res. 2000 Dec 1;28(23):4611-6. PMID:11095669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2iz9.pdb1.gz) 4391 Kb
  • LPC: Ligand-Protein Contacts for 2IZ9
  • CSU: Contacts of Structural Units for 2IZ9
  • Likely Quarternary Molecular Structure file(s) for 2IZ9
  • Structure Factors (1489 Kb)
  • Retrieve 2IZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IZ9 from S2C, [Save to disk]
  • View 2IZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IZ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IZ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2iz9] [2iz9_A] [2iz9_B] [2iz9_R] [2iz9_C] [2iz9_S]
  • SWISS-PROT database: [P03612]
  • Domain organization of [COAT_BPMS2] by SWISSPFAM
  • Other resources with information on 2IZ9
  • Community annotation for 2IZ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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