2J1E Hydrolase date Aug 10, 2006
title High Resolution Crystal Structure Of Cbm32 From A N-Acetyl-B Hexosaminidase In Complex With Lacnac
authors E.Ficko-Blean, A.B.Boraston
compound source
Molecule: Hyaluronidase
Chain: A
Fragment: Carbohydrate Binding Module, Residues 625-767
Synonym: Cbm32
Engineered: Yes
Organism_scientific: Clostridium Perfringens
Organism_taxid: 195103
Atcc: 13124
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.175 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.377 77.377 73.421 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CA, GAL, NDG enzyme
Primary referenceThe interaction of a carbohydrate-binding module from a Clostridium perfringens N-acetyl-beta-hexosaminidase with its carbohydrate receptor., Ficko-Blean E, Boraston AB, J Biol Chem. 2006 Dec 8;281(49):37748-57. Epub 2006 Sep 21. PMID:16990278
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2j1e.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 2J1E
  • CSU: Contacts of Structural Units for 2J1E
  • Likely Quarternary Molecular Structure file(s) for 2J1E
  • Structure Factors (157 Kb)
  • Retrieve 2J1E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J1E from S2C, [Save to disk]
  • Re-refined 2j1e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J1E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J1E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J1E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j1e] [2j1e_A]
  • SWISS-PROT database: [Q8XL08]
  • Domain organization of [OGA_CLOPE] by SWISSPFAM
  • Other resources with information on 2J1E
  • Community annotation for 2J1E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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