2J1M Oxidoreductase date Aug 14, 2006
title P450 Bm3 Heme Domain In Complex With Dmso
authors J.Kuper, W.Tuck-Seng, D.Roccatano, M.Wilmanns, U.Schwaneberg
compound source
Molecule: Cytochrome P450 102
Chain: A, B
Fragment: Heme Domain, Residues 1-455
Synonym: P450 Bm3
Ec: 1.14.14.1
Engineered: Yes
Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Petm11
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.765 86.849 159.408 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand DMS, HEM, ZN enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceUnderstanding a mechanism of organic cosolvent inactivation in heme monooxygenase P450 BM-3., Kuper J, Wong TS, Roccatano D, Wilmanns M, Schwaneberg U, J Am Chem Soc. 2007 May 9;129(18):5786-7. Epub 2007 Apr 13. PMID:17429965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (2j1m.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (2j1m.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 2J1M
  • CSU: Contacts of Structural Units for 2J1M
  • Likely Quarternary Molecular Structure file(s) for 2J1M
  • Structure Factors (2519 Kb)
  • Retrieve 2J1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J1M from S2C, [Save to disk]
  • Re-refined 2j1m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J1M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J1M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j1m_A] [2j1m_B] [2j1m]
  • SWISS-PROT database: [P14779]
  • Domain organization of [CPXB_BACME] by SWISSPFAM
  • Other resources with information on 2J1M
  • Community annotation for 2J1M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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