2J24 Isomerase date Aug 16, 2006
title The Functional Role Of The Conserved Active Site Proline Of Triosephosphate Isomerase
authors M.G.Casteleijn, M.Alahuhta, K.Groebel, I.El-Sayed, K.Augustyns, A.M.Lambeir, P.Neubauer, R.K.Wierenga
compound source
Molecule: Triosephosphate Isomerase, Glycosomal
Chain: A, B
Synonym: Tim, Triose-Phosphate Isomerase
Ec: 5.3.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Trypanosoma Brucei Brucei
Organism_taxid: 5702
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet3a
symmetry Space Group: P 1
R_factor 0.149 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.500 43.720 71.270 80.49 79.61 64.66
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Isomerase E.C.5.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFunctional Role of the Conserved Active Site Proline of Triosephosphate Isomerase(,)., Casteleijn MG, Alahuhta M, Groebel K, El-Sayed I, Augustyns K, Lambeir AM, Neubauer P, Wierenga RK, Biochemistry. 2006 Dec 26;45(51):15483-15494. Epub 2006 Dec 19. PMID:17176070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (2j24.pdb1.gz) 82 Kb
  • CSU: Contacts of Structural Units for 2J24
  • Likely Quarternary Molecular Structure file(s) for 2J24
  • Structure Factors (159 Kb)
  • Retrieve 2J24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J24 from S2C, [Save to disk]
  • Re-refined 2j24 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J24 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J24
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J24, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j24] [2j24_B] [2j24_A]
  • SWISS-PROT database: [P04789]
  • Domain organization of [TPIS_TRYBB] by SWISSPFAM
  • Other resources with information on 2J24
  • Community annotation for 2J24 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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