2J4A Receptor date Aug 28, 2006
title Human Thyroid Hormone Receptor Beta Ligand Binding Domain In With Kb131084
authors M.Farnegardh
compound source
Molecule: Thyroid Hormone Receptor Beta-1
Chain: A
Fragment: Ligand Binding Domain, Residues 209-461
Synonym: Thyroid Hormone Receptor Beta Lbd
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.230 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.212 107.422 67.208 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand OEF BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThyroid receptor ligands. 6. A high affinity "direct antagonist" selective for the thyroid hormone receptor., Koehler K, Gordon S, Brandt P, Carlsson B, Backsbro-Saeidi A, Apelqvist T, Agback P, Grover GJ, Nelson W, Grynfarb M, Farnegardh M, Rehnmark S, Malm J, J Med Chem. 2006 Nov 16;49(23):6635-7. PMID:17154490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2j4a.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2J4A
  • CSU: Contacts of Structural Units for 2J4A
  • Likely Quarternary Molecular Structure file(s) for 2J4A
  • Structure Factors (111 Kb)
  • Retrieve 2J4A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J4A from S2C, [Save to disk]
  • Re-refined 2j4a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J4A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J4A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J4A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j4a] [2j4a_A]
  • SWISS-PROT database: [P10828]
  • Domain organization of [THB_HUMAN] by SWISSPFAM
  • Domain found in 2J4A: [HOLI ] by SMART
  • Other resources with information on 2J4A
  • Community annotation for 2J4A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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