2J58 Membrane Protein date Sep 12, 2006
title The Structure Of Wza
authors C.Dong, J.H.Naismith
compound source
Molecule: Outer Membrane Lipoprotein Wza
Chain: A, B, C, D, E, F, G, H
Fragment: Mature Protein, Residues 21-379
Synonym: Wza
Engineered: Yes
Other_details: Acylated At Cys 21 Selenomethionine Derivati
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: O9a\:K30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Le392
Expression_system_vector_type: Plasmid
Expression_system_vector: Pbad24
Expression_system_plasmid: Pwq126
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.719 215.268 220.892 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.26 Å
ligand HEX, MSE, OCT, SC2, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G
  • porin activity


  • Primary referenceWza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein., Dong C, Beis K, Nesper J, Brunkan-Lamontagne AL, Clarke BR, Whitfield C, Naismith JH, Nature. 2006 Nov 9;444(7116):226-9. Epub 2006 Nov 1. PMID:17086202
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (496 Kb) [Save to disk]
  • Biological Unit Coordinates (2j58.pdb1.gz) 477 Kb
  • LPC: Ligand-Protein Contacts for 2J58
  • CSU: Contacts of Structural Units for 2J58
  • Likely Quarternary Molecular Structure file(s) for 2J58
  • Structure Factors (3122 Kb)
  • Retrieve 2J58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J58 from S2C, [Save to disk]
  • Re-refined 2j58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J58
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J58, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j58_B] [2j58_H] [2j58_G] [2j58] [2j58_F] [2j58_A] [2j58_D] [2j58_E] [2j58_C]
  • SWISS-PROT database: [Q9X4B7]
  • Domain organization of [Q9X4B7_ECOLX] by SWISSPFAM
  • Other resources with information on 2J58
  • Community annotation for 2J58 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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