2J5D	Membrane Protein	date	Sep 14, 2006
title	Nmr Structure Of Bnip3 Transmembrane Domain In Lipid Bicelle
authors	E.V.Bocharov, Y.E.Pustovalova, P.E.Volynsky, I.V.Maslennikov, M.V.Goncharuk, Y.S.Ermolyuk, A.S.Arseniev
compound		source
Molecule: Bcl2adenovirus E1b 19 Kda Protein-Interacting Pr Chain: A, B Fragment: Homodimeric Transmembrane Domain, Residues 146-19 Synonym: Bnip3 Tm Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_vector: Pgemex1 Other_details: Mitochondional Protein From Bcl-2 Family
method	Solution NMR
Gene Ontology	Chain Function Process Component A, B
Primary reference	Unique dimeric structure of BNip3 transmembrane domain suggests membrane permeabilization as a cell death trigger., Bocharov EV, Pustovalova YE, Pavlov KV, Volynsky PE, Goncharuk MV, Ermolyuk YS, Karpunin DV, Schulga AA, Kirpichnikov MP, Efremov RG, Maslennikov IV, Arseniev AS, J Biol Chem. 2007 Jun 1;282(22):16256-66. Epub 2007 Apr 4. PMID:17412696

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk] Biological Unit Coordinates (2j5d.pdb1.gz) 18 Kb CSU: Contacts of Structural Units for 2J5D Original NMR restraints for 2J5D from PDB Retrieve 2J5D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J5D from S2C, [Save to disk]

View 2J5D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J5D

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J5D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j5d_A] [2j5d] [2j5d_B] SWISS-PROT database: [Q12983] Belongs to the bcl2/adenovirus e1b-interacting protein 3 (bnip3) family according to TCDB. Domain organization of [BNIP3_HUMAN] by SWISSPFAM

Other resources with information on 2J5D

Community annotation for 2J5D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---