2J5E	Transferase	date	Sep 14, 2006
title	Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab
authors	C.H.Yun, M.J.Eck
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A Fragment: Kinase Domain, Residues 696-1022 Synonym: Receptor Tyrosine-Protein Kinase Erbb-1 Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacg2t
symmetry	Space Group: I 2 3	R_factor 0.186 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 145.021 145.021 145.021 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	CL, CY0	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-guided development of affinity probes for tyrosine kinases using chemical genetics., Blair JA, Rauh D, Kung C, Yun CH, Fan QW, Rode H, Zhang C, Eck MJ, Weiss WA, Shokat KM, Nat Chem Biol. 2007 Apr;3(4):229-238. Epub 2007 Mar 4. PMID:17334377

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (2j5e.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 2J5E CSU: Contacts of Structural Units for 2J5E Likely Quarternary Molecular Structure file(s) for 2J5E Structure Factors (136 Kb) Retrieve 2J5E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J5E from S2C, [Save to disk] Re-refined 2j5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J5E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J5E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J5E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j5e_A] [2j5e] SWISS-PROT database: [P00533] Domain organization of [EGFR_HUMAN] by SWISSPFAM Domain found in 2J5E: [TyrKc ] by SMART

Other resources with information on 2J5E

Community annotation for 2J5E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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