2J5F Transferase date Sep 14, 2006
title Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab
authors C.H.Yun, M.J.Eck
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Kinase Domain, Residues 696-1022
Synonym: Receptor Tyrosine-Protein Kinase Erbb-1
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacg2t
symmetry Space Group: I 2 3
R_factor 0.190 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.876 145.876 145.876 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand DJK BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-guided development of affinity probes for tyrosine kinases using chemical genetics., Blair JA, Rauh D, Kung C, Yun CH, Fan QW, Rode H, Zhang C, Eck MJ, Weiss WA, Shokat KM, Nat Chem Biol. 2007 Apr;3(4):229-238. Epub 2007 Mar 4. PMID:17334377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2j5f.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2J5F
  • CSU: Contacts of Structural Units for 2J5F
  • Likely Quarternary Molecular Structure file(s) for 2J5F
  • Structure Factors (153 Kb)
  • Retrieve 2J5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J5F from S2C, [Save to disk]
  • Re-refined 2j5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J5F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J5F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j5f] [2j5f_A]
  • SWISS-PROT database: [P00533]
  • Domain organization of [EGFR_HUMAN] by SWISSPFAM
  • Domain found in 2J5F: [TyrKc ] by SMART
  • Other resources with information on 2J5F
  • Community annotation for 2J5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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