2J6T	Transferase Dna	date	Oct 04, 2006
title	Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna Polymera Methylguanine Modified Dna, And Datp.
authors	A.Irimia, R.L.Eoff, F.P.Guengerich, M.Egli
compound		source
Molecule: Dna Polymerase Iv Chain: A Synonym: Pol Iv Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 273057 Strain: P2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22bdpo4-Nhis Other_details: Gene Dpo4
Molecule: 5'-D(Gpgpgpgpgpapapgpgpap Tptpc)-3' Chain: P Synonym: 13-Mer Primer Engineered: Yes Other_details: 5'Gggggaaggattc3'		Synthetic: Yes
Molecule: 5'-D(Tpcpaptpxpgpapaptpcp Cptptpcpcpcpcpc)-3'; Chain: T Synonym: 18-Mer Template Engineered: Yes Other_details: 5'Tcat G32 Gaatccttccccc3'		Synthetic: Yes
symmetry	Space Group: P 21 21 2	R_factor 0.237 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.012 102.949 53.013 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	6OG, CA, DTP	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Sulfolobus solfataricus DNA polymerase Dpo4 is partially inhibited by "wobble" pairing between O6-methylguanine and cytosine, but accurate bypass is preferred., Eoff RL, Irimia A, Egli M, Guengerich FP, J Biol Chem. 2007 Jan 12;282(2):1456-67. Epub 2006 Nov 14. PMID:17105728

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (2j6t.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 2J6T CSU: Contacts of Structural Units for 2J6T Likely Quarternary Molecular Structure file(s) for 2J6T Structure Factors (121 Kb) Retrieve 2J6T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J6T from S2C, [Save to disk] Re-refined 2j6t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J6T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J6T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J6T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j6t_T] [2j6t_P] [2j6t] [2j6t_A] SWISS-PROT database: [Q97W02] Domain organization of [DPO42_SULSO] by SWISSPFAM

Other resources with information on 2J6T

Community annotation for 2J6T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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