2J6V Lyase date Oct 04, 2006
title Crystal Structure Of The Dna Repair Enzyme Uv Damage Endonuc
authors K.Paspaleva, E.A.J.Thomassen, N.S.Pannu, N.Goossen, J.P.Abrahams
compound source
Molecule: Uv Endonuclease
Chain: A, B
Synonym: Uvde
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Petuvde
Expression_system_plasmid: Pub24
symmetry Space Group: P 1
R_factor 0.182 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.352 48.700 68.763 106.14 94.36 114.20
method X-Ray Diffractionresolution 1.55 Å
ligand ALY, KCX, MN, MSE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


    • Primary referenceCrystal structure of the DNA repair enzyme ultraviolet damage endonuclease., Paspaleva K, Thomassen E, Pannu NS, Iwai S, Moolenaar GF, Goosen N, Abrahams JP, Structure. 2007 Oct;15(10):1316-24. PMID:17937920
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (2j6v.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (2j6v.pdb2.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2J6V
  • CSU: Contacts of Structural Units for 2J6V
  • Likely Quarternary Molecular Structure file(s) for 2J6V
  • Structure Factors (1012 Kb)
  • Retrieve 2J6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J6V from S2C, [Save to disk]
    • View 2J6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J6V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J6V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j6v_B] [2j6v_A] [2j6v]
  • SWISS-PROT database: [Q746K1]
  • Domain organization of [Q746K1_THET2] by SWISSPFAM
    • Other resources with information on 2J6V
  • Community annotation for 2J6V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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