2J8C Electron Transport date Oct 24, 2006
title X-Ray High Resolution Structure Of The Photosynthetic Reacti From Rb. Sphaeroides At Ph 8 In The Neutral State
authors J.Koepke, R.Diehm, G.Fritzsch
compound source
Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Photosynthetic Reaction Center H Subunit
Other_details: Ph 8 Neutral State
 Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063

Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Photosynthetic Reaction Center L Subunit
Other_details: Ph 8 Neutral State
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Photosynthetic Reaction Center M Subunit
Other_details: Ph 8 Neutral State
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
symmetry Space Group: P 31 2 1
R_factor 0.178 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.690 138.690 184.613 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.87 Å
ligand BCL, BPH, CDL, FE, GGD, GOL, HTO, LDA, PC1, PO4, SPO, U10 enzyme
note 2J8C is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


    • L


    M


    Primary referencepH Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter sphaeroides in the Neutral and Charge Separated States., Koepke J, Krammer EM, Klingen AR, Sebban P, Ullmann GM, Fritzsch G, J Mol Biol. 2007 Aug 10;371(2):396-409. Epub 2007 May 10. PMID:17570397
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (2j8c.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 2J8C
  • CSU: Contacts of Structural Units for 2J8C
  • Likely Quarternary Molecular Structure file(s) for 2J8C
  • Structure Factors (1123 Kb)
  • Retrieve 2J8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J8C from S2C, [Save to disk]
  • Re-refined 2j8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2J8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J8C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J8C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j8c_L] [2j8c_M] [2j8c] [2j8c_H]
  • SWISS-PROT database: [P0C0Y7] [P0C0Y8] [P0C0Y9]
  • Belongs to the photosynthetic reaction center (prc) family according to TCDB.
  • Domain organization of [RCEH_RHOSH] [RCEL_RHOSH] [RCEM_RHOSH] by SWISSPFAM
    • Other resources with information on 2J8C
  • Community annotation for 2J8C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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