2J8G	Hydrolase	date	Oct 25, 2006
title	Crystal Structure Of The Modular Cpl-1 Endolysin Complexed W Peptidoglycan Analogue (E94q Mutant In Complex With A Tetrasaccharide- Pentapeptide)
authors	I.Perez-Dorado, J.A.Hermoso
compound		source
Molecule: Lysozyme Chain: A Synonym: Endolysin, Muramidase, Cp-1 Lysin, Cpl-1 Ec: 3.2.1.17 Engineered: Yes Mutation: Yes		Organism_scientific: Bacteriophage Cp-1 Organism_taxid: 10747 Expression_system: Escherichia Coli Dh1 Expression_system_taxid: 536056
symmetry	Space Group: C 2 2 21	R_factor 0.187 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.520 97.390 127.140 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.69 Å
ligand	ALA, AMU, DGL, FMT, LYS, NAG	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Elucidation of the molecular recognition of bacterial cell wall by modular pneumococcal phage endolysin CPL-1., Perez-Dorado I, Campillo NE, Monterroso B, Hesek D, Lee M, Paez JA, Garcia P, Martinez-Ripoll M, Garcia JL, Mobashery S, Menendez M, Hermoso JA, J Biol Chem. 2007 Aug 24;282(34):24990-9. Epub 2007 Jun 19. PMID:17581815

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (2j8g.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 2J8G CSU: Contacts of Structural Units for 2J8G Likely Quarternary Molecular Structure file(s) for 2J8G Structure Factors (445 Kb) Retrieve 2J8G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J8G from S2C, [Save to disk] Re-refined 2j8g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J8G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J8G

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J8G, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j8g] [2j8g_A] SWISS-PROT database: [P15057] Domain organization of [LYS_BPCP1] by SWISSPFAM Domain found in 2J8G: [Glyco_25 ] by SMART

Other resources with information on 2J8G

Community annotation for 2J8G at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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