2J8X	Hydrolase Inhibitor	date	Oct 31, 2006
title	Epstein-Barr Virus Uracil-Dna Glycosylase In Complex With Ug Pbs-2
authors	T.Geoui, M.Buisson, N.Tarbouriech, W.P.Burmeister
compound		source
Molecule: Uracil-Dna Glycosylase Chain: A, C Fragment: Uracil-Dna Glycosylase Domain, Residues 25-255 Ec: 3.2.2.3 Engineered: Yes		Organism_scientific: Epstein-Barr Virus Organism_common: Hhv-4 Organism_taxid: 10376 Strain: B95-8 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproexhtb
Molecule: Uracil-Dna Glycosylase Inhibitor Chain: B, D Engineered: Yes		Organism_scientific: Bacillus Phage Pbs2 Organism_taxid: 10684 Strain: Pbs-2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsetb
symmetry	Space Group: C 2 2 21	R_factor 0.193 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.406 82.942 269.130 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	URE	enzyme	Hydrolase E.C.3.2.2.3 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	New insights on the role of the gamma-herpesvirus uracil-DNA glycosylase leucine loop revealed by the structure of the Epstein-Barr virus enzyme in complex with an inhibitor protein., Geoui T, Buisson M, Tarbouriech N, Burmeister WP, J Mol Biol. 2007 Feb 9;366(1):117-31. Epub 2006 Nov 7. PMID:17157317

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (2j8x.pdb1.gz) 55 Kb Biological Unit Coordinates (2j8x.pdb2.gz) 53 Kb LPC: Ligand-Protein Contacts for 2J8X CSU: Contacts of Structural Units for 2J8X Likely Quarternary Molecular Structure file(s) for 2J8X Structure Factors (224 Kb) Retrieve 2J8X in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2J8X from S2C, [Save to disk] Re-refined 2j8x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J8X in 3D

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Visual 3D analysis of 2J8X

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2J8X, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j8x_C] [2j8x_A] [2j8x_D] [2j8x_B] [2j8x] SWISS-PROT database: [Q777D9] [P14739] [P12888] Domain organization of [Q777D9_EBVG] [UNGI_BPPB2] [UNG_EBVB9] by SWISSPFAM Domains found in 2J8X: [UDG] [UreE_C ] by SMART

Other resources with information on 2J8X

Community annotation for 2J8X at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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