OCA Atlas for 2J9A

2J9A

Hydrolase Inhibitor

date

Nov 06, 2006

title

Bllap In Complex With Microginin Fr1

authors

M.Kraft, C.Schleberger, J.Weckesser, G.E.Schulz

compound

source

Molecule: Cytosol Aminopeptidase
Chain: A
Synonym: Leucine Aminopeptidase, Leucyl Aminopeptidase, Pro Aminopeptidase, Lap, Prolyl Aminopeptidase;
Ec: 3.4.11.1, 3.4.11.5

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Eye
Tissue: Lens

Molecule: Microginin Fr1
Chain: D

Organism_scientific: Microcystis Sp.
Organism_taxid: 1127

symmetry

Space Group: P 63 2 2

R_factor

0.145

R_Free

0.173

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
129.982	129.982	120.813	90.00	90.00	120.00

method

X-Ray Diffraction

resolution

1.73 Å

ligand

AHY, CL, DMS, MLE, MPD, ZN

enzyme

Hydrolase E.C.3.4.11.1 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Binding structure of the leucine aminopeptidase inhibitor microginin FR1., Kraft M, Schleberger C, Weckesser J, Schulz GE, FEBS Lett. 2006 Dec 22;580(30):6943-7. Epub 2006 Dec 4. PMID:17157838

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]

Biological Unit Coordinates (2j9a.pdb1.gz) 524 Kb

LPC: Ligand-Protein Contacts for 2J9A

CSU: Contacts of Structural Units for 2J9A

Likely Quarternary Molecular Structure file(s) for 2J9A

Structure Factors (856 Kb)

Retrieve 2J9A in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2J9A from S2C, [Save to disk]

Re-refined 2j9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2J9A in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2J9A

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2J9A, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2j9a_A] [2j9a_D] [2j9a]

SWISS-PROT database: [P00727]

Domain organization of [AMPL_BOVIN] by SWISSPFAM

Other resources with information on 2J9A

Community annotation for 2J9A at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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