2J9R Transferase date Nov 15, 2006
title Thymidine Kinase From B. Anthracis In Complex With Dt.
authors U.Kosinska, C.Carnrot, M.P.B.Sandrini, A.R.Clausen, L.Wang, J.Pis S.Eriksson, H.Eklund
compound source
Molecule: Thymidine Kinase
Chain: A
Ec: 2.7.1.21
Engineered: Yes
Organism_scientific: Bacillus Anthracis
Organism_taxid: 260799
Strain: Sterne
Variant: 34f2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_vector: Pet-14b
symmetry Space Group: I 41 2 2
R_factor 0.203 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.171 73.171 223.734 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand PO4, THM, ZN enzyme Transferase E.C.2.7.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • thymidine kinase activity


  • Primary referenceStructural studies of thymidine kinases from Bacillus anthracis and Bacillus cereus provide insights into quaternary structure and conformational changes upon substrate binding., Kosinska U, Carnrot C, Sandrini MP, Clausen AR, Wang L, Piskur J, Eriksson S, Eklund H, FEBS J. 2007 Feb;274(3):727-37. PMID:17288553
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2j9r.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 2J9R
  • CSU: Contacts of Structural Units for 2J9R
  • Likely Quarternary Molecular Structure file(s) for 2J9R
  • Structure Factors (125 Kb)
  • Retrieve 2J9R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J9R from S2C, [Save to disk]
  • Re-refined 2j9r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J9R in 3D
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  • Visual 3D analysis of 2J9R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J9R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j9r_A] [2j9r]
  • SWISS-PROT database: [Q81JX0]
  • Domain organization of [KITH_BACAN] by SWISSPFAM
  • Other resources with information on 2J9R
  • Community annotation for 2J9R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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