2JAW	Hydrolase	date	Nov 30, 2006
title	Crystal Structure Of D41n Variant Of Human Mitochondrial 5'( Deoxyribonucleotidase (Mdn) In Complex With 5-Bromovinyldeo 5'-Monophosphate
authors	K.Wallden, B.Ruzzenente, V.Bianchi, P.Nordlund
compound		source
Molecule: 5'(3')-Deoxyribonucleotidase Chain: A Fragment: Residues 32-228 Synonym: 5', 3'-Nucleotidase, Mitochondrial, Mitochondrial Deoxyribonucleotidase, Deoxy-5'-Nucleotidase 2 , Dnt-2; Ec: 3.1.3.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector: Pet20b
symmetry	Space Group: P 43 21 2	R_factor 0.185 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.604 73.604 106.374 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	BVP, MG	enzyme	Hydrolase E.C.3.1.3 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structures of Human and Murine Deoxyribonucleotidases: Insights into Recognition of Substrates and Nucleotide Analogues., Wallden K, Rinaldo-Matthis A, Ruzzenente B, Rampazzo C, Bianchi V, Nordlund P, Biochemistry. 2007 Nov 7;. PMID:17985935

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (2jaw.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 2JAW CSU: Contacts of Structural Units for 2JAW Likely Quarternary Molecular Structure file(s) for 2JAW Structure Factors (163 Kb) Retrieve 2JAW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JAW from S2C, [Save to disk] Re-refined 2jaw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JAW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JAW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JAW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jaw] [2jaw_A] SWISS-PROT database: [Q9NPB1] Domain organization of [NT5M_HUMAN] by SWISSPFAM

Other resources with information on 2JAW

Community annotation for 2JAW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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