2JC5	Hydrolase	date	Dec 19, 2006
title	Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From Neisseri Meningitidis
authors	E.P.Carpenter, A.Corbett, H.Thomson, J.Adacha, K.Jensen, J.Berger I.Kasampalidis, R.Exley, M.Winterbotham, C.Tang, G.S.Baldwin, P.
compound		source
Molecule: Exodeoxyribonuclease Chain: A Synonym: Apurinic Apyrimidinic Ap Endonuclease From Neisser Meningitidis - Nape; Ec: 3.1.11.2 Engineered: Yes		Organism_scientific: Neisseria Meningitidis Organism_taxid: 487 Strain: Mc58 Serogroup B Atcc: 23151 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Er2566 Expression_system_plasmid: Pproex Htb
symmetry	Space Group: P 1 21 1	R_factor 0.120 R_Free 0.159
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.156 79.511 41.045 90.00 107.22 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	BCN, DIO, GOL, MG	enzyme	Hydrolase E.C.3.1.11.2 BRENDA
Gene Ontology	Chain Function Process Component A nuclease activity endonuclease activity phosphodiesterase I activity... double-stranded DNA 3'-5' ex...
Primary reference	AP endonuclease paralogues with distinct activities in DNA repair and bacterial pathogenesis., Carpenter EP, Corbett A, Thomson H, Adacha J, Jensen K, Bergeron J, Kasampalidis I, Exley R, Winterbotham M, Tang C, Baldwin GS, Freemont P, EMBO J. 2007 Mar 7;26(5):1363-72. Epub 2007 Feb 22. PMID:17318183

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk] Biological Unit Coordinates (2jc5.pdb1.gz) 178 Kb LPC: Ligand-Protein Contacts for 2JC5 CSU: Contacts of Structural Units for 2JC5 Likely Quarternary Molecular Structure file(s) for 2JC5 Structure Factors (253 Kb) Retrieve 2JC5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JC5 from S2C, [Save to disk] Re-refined 2jc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JC5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JC5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JC5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jc5_A] [2jc5] SWISS-PROT database: [Q7DD47] Domain organization of [Q7DD47_NEIMB] by SWISSPFAM

Other resources with information on 2JC5

Community annotation for 2JC5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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