2JCG Transcription date Dec 22, 2006
title Apo Form Of The Catabolite Control Protein A (Ccpa) From Bac Megaterium, With The Dna Binding Domain
authors R.K.Singh, S.Panjikar, G.J.Palm, W.Hinrichs
compound source
Molecule: Glucose-Resistance Amylase Regulator
Chain: A
Synonym: Catabolite Control Protein, Catabolite Control Pro
Engineered: Yes
 Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.229 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.450 74.450 238.840 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the apo form of the catabolite control protein A (CcpA) from Bacillus megaterium with a DNA-binding domain., Singh RK, Palm GJ, Panjikar S, Hinrichs W, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Apr 1;63(Pt, 4):253-7. Epub 2007 Mar 12. PMID:17401189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2jcg.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 2JCG
  • CSU: Contacts of Structural Units for 2JCG
  • Likely Quarternary Molecular Structure file(s) for 2JCG
  • Structure Factors (169 Kb)
  • Retrieve 2JCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JCG from S2C, [Save to disk]
  • Re-refined 2jcg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JCG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JCG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jcg_A] [2jcg]
  • SWISS-PROT database: [P46828]
  • Domain organization of [CCPA_BACME] by SWISSPFAM
  • Domain found in 2JCG: [HTH_LACI ] by SMART
    • Other resources with information on 2JCG
  • Community annotation for 2JCG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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