2JD7 Metal Transport date Jan 05, 2007
title Crystal Structure Of The Fe-Soaked Ferritin From The Hyperth Archaeal Anaerobe Pyrococcus Furiosus
authors J.Tatur, W.R.Hagen, P.M.Matias
compound source
Molecule: Ferritin Homolog
Chain: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z;
Synonym: Ferritin
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.199 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
254.301 342.878 266.221 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand FE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, T, N, K, 7, Y, E, 2, Z, 1, J, W, B, H, D, I, G, U, F, V, Q, M, 0, C, L, A, 6, O, 3, X, P, 9, 8, 4, R, 5


Primary referenceCrystal structure of the ferritin from the hyperthermophilic archaeal anaerobe Pyrococcus furiosus., Tatur J, Hagen WR, Matias PM, J Biol Inorg Chem. 2007 Jun;12(5):615-30. Epub 2007 Feb 16. PMID:17541801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1011 Kb) [Save to disk]
  • Biological Unit Coordinates (2jd7.pdb1.gz) 666 Kb
  • Biological Unit Coordinates (2jd7.pdb2.gz) 669 Kb
  • LPC: Ligand-Protein Contacts for 2JD7
  • CSU: Contacts of Structural Units for 2JD7
  • Retrieve 2JD7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JD7 from S2C, [Save to disk]
  • View 2JD7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JD7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JD7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jd7_B] [2jd7_V] [2jd7_5] [2jd7_I] [2jd7_7] [2jd7_E] [2jd7_W] [2jd7_M] [2jd7_Q] [2jd7_H] [2jd7_F] [2jd7_6] [2jd7_L] [2jd7_A] [2jd7_2] [2jd7_N] [2jd7_U] [2jd7_G] [2jd7_P] [2jd7_X] [2jd7_J] [2jd7_Z] [2jd7_K] [2jd7_R] [2jd7_1] [2jd7] [2jd7_8] [2jd7_D] [2jd7_Y] [2jd7_T] [2jd7_S] [2jd7_0] [2jd7_O] [2jd7_9] [2jd7_C] [2jd7_4] [2jd7_3]
  • SWISS-PROT database: [Q8U2T8]
  • Domain organization of [Q8U2T8_PYRFU] by SWISSPFAM
  • Other resources with information on 2JD7
  • Community annotation for 2JD7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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