2JDC Transferase date Jan 05, 2007
title Glyphosate N-Acetyltransferase Bound To Oxidized Coa And Sul
authors D.L.Siehl, L.A.Castle, R.Gorton, R.J.Keenan
compound source
Molecule: Glyphosate N-Acetyltransferase
Chain: A
Engineered: Yes
Organism_scientific: Bacillus Licheniformis
Organism_taxid: 1402
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe80
Other_details: The Enzyme Is A Shuffled Variant Derived Fro Discovered In B. Licheniformis.
symmetry Space Group: C 1 2 1
R_factor 0.148 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.056 48.911 46.461 90.00 103.54 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CAO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe molecular basis of glyphosate resistance by an optimized microbial acetyltransferase., Siehl DL, Castle LA, Gorton R, Keenan RJ, J Biol Chem. 2007 Apr 13;282(15):11446-55. Epub 2007 Feb 1. PMID:17272278
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2jdc.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2JDC
  • CSU: Contacts of Structural Units for 2JDC
  • Likely Quarternary Molecular Structure file(s) for 2JDC
  • Structure Factors (257 Kb)
  • Retrieve 2JDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JDC from S2C, [Save to disk]
  • Re-refined 2jdc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JDC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JDC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jdc] [2jdc_A]
  • SWISS-PROT database: [Q65LG7]
  • Domain organization of [Q65LG7_BACLD] by SWISSPFAM
  • Other resources with information on 2JDC
  • Community annotation for 2JDC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science