2JDT Transferase date Jan 12, 2007
title Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5-S Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)Ethyl)Amide
authors T.G.Davies, M.L.Verdonk, B.Graham, S.Saalau-Bethell, C.C.F.Hamle T.Mchardy, I.Collins, M.D.Garrett, P.Workman, S.J.Woodhead, H.Jh D.Barford
compound source
Molecule: Camp-Dependent Protein Kinase
Chain: A
Synonym: Protein Kinase A, Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Mutation: Yes
Other_details: Alpha-Catalytic Subunit
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha
Chain: I
Fragment: Residues 5-24
Synonym: Pki-Alpha, Camp-Dependent Protein Kinase Inhibitor
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.863 75.563 80.097 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand I5S, SEP, TPO BindingDB enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


I


Primary referenceA structural comparison of inhibitor binding to PKB, PKA and PKA-PKB chimera., Davies TG, Verdonk ML, Graham B, Saalau-Bethell S, Hamlett CC, McHardy T, Collins I, Garrett MD, Workman P, Woodhead SJ, Jhoti H, Barford D, J Mol Biol. 2007 Mar 30;367(3):882-94. Epub 2007 Jan 9. PMID:17275837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2jdt.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2JDT
  • CSU: Contacts of Structural Units for 2JDT
  • Likely Quarternary Molecular Structure file(s) for 2JDT
  • Structure Factors (177 Kb)
  • Retrieve 2JDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JDT from S2C, [Save to disk]
  • Re-refined 2jdt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JDT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JDT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jdt] [2jdt_A] [2jdt_I]
  • SWISS-PROT database: [P61925] [P00517]
  • Domain organization of [IPKA_HUMAN] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 2JDT: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 2JDT
  • Community annotation for 2JDT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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