2JE4 Hydrolase Hydrolase Inhibitor date Jan 15, 2007
title Atomic-Resolution Crystal Structure Of Chemically-Synthesize Protease In Complex With Jg-365
authors E.Malito, E.C.B.Johnson, W.J.Tang
compound source
Molecule: Protease
Chain: A, B
Synonym: Hiv1-Protease
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676

Molecule: Inhibitor Molecule Jg365
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.501 58.853 60.886 90.00 90.00 90.00
method X-Ray Diffraction, 2 Modelsresolution 1.07 Å
ligand ACT, DBU, GOL, JG3, NLE, SO4, VME enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceModular Total Chemical Synthesis of a Human Immunodeficiency Virus Type 1 Protease., Johnson EC, Malito E, Shen Y, Rich D, Tang WJ, Kent SB, J Am Chem Soc. 2007 Sep 19;129(37):11480-11490. Epub 2007 Aug 18. PMID:17705484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (2je4.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2JE4
  • CSU: Contacts of Structural Units for 2JE4
  • Structure Factors (1007 Kb)
  • Retrieve 2JE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JE4 from S2C, [Save to disk]
    • View 2JE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JE4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JE4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2je4_A] [2je4] [2je4_C] [2je4_B]
  • SWISS-PROT database: [P03369]
  • Domain organization of [POL_HV1A2] by SWISSPFAM
    • Other resources with information on 2JE4
  • Community annotation for 2JE4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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