2JER	Hydrolase	date	Jan 19, 2007
title	Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its R
authors	S.Tavarez, J.L.Llacer, V.Rubio
compound		source
Molecule: Agmatine Deiminase Chain: A, B, C, D, E, F, G, H Synonym: Agmatine Iminohydrolase Ec: 3.5.3.12 Engineered: Yes Other_details: Carbon Atom Of The Guanidinium Group Of Agma Covalently Linked With The Thiol Group Of Cys357		Organism_scientific: Enterococcus Faecalis Organism_taxid: 1351 Strain: Sd10 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet22b
symmetry	Space Group: P 1 21 1	R_factor 0.167 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.727 130.165 126.726 90.00 93.61 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	AGT	enzyme	Hydrolase E.C.3.5.3.12 BRENDA
note	2JER is a representative structure and supersedes 2J2T
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	The gene cluster for agmatine catabolism of Enterococcus faecalis: study of recombinant putrescine transcarbamylase and agmatine deiminase and a snapshot of agmatine deiminase catalyzing its reaction., Llacer JL, Polo LM, Tavarez S, Alarcon B, Hilario R, Rubio V, J Bacteriol. 2007 Feb;189(4):1254-65. Epub 2006 Oct 6. PMID:17028272

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (941 Kb) [Save to disk] Biological Unit Coordinates (2jer.pdb1.gz) 470 Kb Biological Unit Coordinates (2jer.pdb2.gz) 467 Kb LPC: Ligand-Protein Contacts for 2JER CSU: Contacts of Structural Units for 2JER Likely Quarternary Molecular Structure file(s) for 2JER Structure Factors (5770 Kb) Retrieve 2JER in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JER from S2C, [Save to disk] Re-refined 2jer structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JER in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JER

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JER, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jer_F] [2jer_A] [2jer_C] [2jer_G] [2jer_D] [2jer_H] [2jer_B] [2jer_E] [2jer] SWISS-PROT database: [Q837U5] Domain organization of [AGUA_ENTFA] by SWISSPFAM

Other resources with information on 2JER

Community annotation for 2JER at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---