2JFD	Transferase	date	Jan 31, 2007
title	Structure Of The Mat Domain Of Human Fas
authors	G.Bunkoczi, K.Kavanagh, V.Hozjan, A.Rojkova, X.Wu, C.H.Arrowsmith A.Edwards, M.Sundstrom, J.Weigelt, S.Smith, U.Oppermann
compound		source
Molecule: Fatty Acid Synthase Chain: A, B, C, D Fragment: Mat Domain, Residues 422-823 Ec: 2.3.1.85 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 21 21 21	R_factor 0.212 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.980 92.690 259.870 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.81 Å
ligand		enzyme	Transferase E.C.2.3.1.85 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis for different specificities of acyltransferases associated with the human cytosolic and mitochondrial fatty acid synthases., Bunkoczi G, Misquitta S, Wu X, Lee WH, Rojkova A, Kochan G, Kavanagh KL, Oppermann U, Smith S, Chem Biol. 2009 Jun 26;16(6):667-75. doi: 10.1016/j.chembiol.2009.04.011. PMID:19549604

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk] Biological Unit Coordinates (2jfd.pdb1.gz) 62 Kb Biological Unit Coordinates (2jfd.pdb2.gz) 60 Kb Biological Unit Coordinates (2jfd.pdb3.gz) 62 Kb Biological Unit Coordinates (2jfd.pdb4.gz) 58 Kb CSU: Contacts of Structural Units for 2JFD Likely Quarternary Molecular Structure file(s) for 2JFD Structure Factors (569 Kb) Retrieve 2JFD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JFD from S2C, [Save to disk] Re-refined 2jfd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JFD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JFD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JFD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jfd_A] [2jfd_D] [2jfd] [2jfd_C] [2jfd_B] SWISS-PROT database: [P49327] Domain organization of [FAS_HUMAN] by SWISSPFAM

Other resources with information on 2JFD

Community annotation for 2JFD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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