2JFM Transferase date Feb 02, 2007
title Crystal Structure Of Human Ste20-Like Kinase (Unliganded For
authors A.C.W.Pike, P.Rellos, O.Fedorov, T.Keates, E.Salah, P.Savitsky, E.Papagrigoriou, G.Bunkoczi, F.Von Delft, C.H.Arrowsmith, A.Edw J.Weigelt, M.Sundstrom, S.Knapp
compound source
Molecule: Ste20-Like Serine-Threonine Kinase
Chain: A
Fragment: Kinase Domain, Residues 19-320
Synonym: Ste20-Like Kinase, Ste20-Related Serinethreonine- Kinase, Ste20-Related Kinase, Hslk, Serinethreonine-Protei 2, Ctcl Tumor Antigen Se20-9;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 61 2 2
R_factor 0.230 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.073 102.073 176.993 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand EDO, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceActivation segment dimerization: a mechanism for kinase autophosphorylation of non-consensus sites., Pike AC, Rellos P, Niesen FH, Turnbull A, Oliver AW, Parker SA, Turk BE, Pearl LH, Knapp S, EMBO J. 2008 Feb 20;27(4):704-14. Epub 2008 Jan 31. PMID:18239682
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2jfm.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 2JFM
  • CSU: Contacts of Structural Units for 2JFM
  • Structure Factors (177 Kb)
  • Retrieve 2JFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JFM from S2C, [Save to disk]
  • Re-refined 2jfm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JFM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JFM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jfm_A] [2jfm]
  • SWISS-PROT database: [Q9H2G2]
  • Domain organization of [SLK_HUMAN] by SWISSPFAM
  • Domain found in 2JFM: [S_TKc ] by SMART
  • Other resources with information on 2JFM
  • Community annotation for 2JFM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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