2JHQ	Hydrolase	date	Feb 23, 2007
title	Crystal Structure Of Uracil Dna-Glycosylase From Vibrio Chol
authors	I.L.U.Raeder, E.Moe, N.P.Willassen, A.O.Smalas, I.Leiros
compound		source
Molecule: Uracil Dna-Glycosylase Chain: A Synonym: Udg Ec: 3.2.2.3 Engineered: Yes		Organism_scientific: Vibrio Cholerae Organism_taxid: 666 Atcc: 14035 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pdest14
symmetry	Space Group: P 21 21 21	R_factor 0.175 R_Free 0.210
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.140 60.440 61.330 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CL	enzyme	Hydrolase E.C.3.2.2.3 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of uracil-DNA N-glycosylase (UNG) from Vibrio cholerae: mapping temperature adaptation through structural and mutational analysis., Raeder IL, Moe E, Willassen NP, Smalas AO, Leiros I, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Feb 1;66(Pt 2):130-6. Epub, 2010 Jan 26. PMID:20124707

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (2jhq.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 2JHQ CSU: Contacts of Structural Units for 2JHQ Likely Quarternary Molecular Structure file(s) for 2JHQ Structure Factors (266 Kb) Retrieve 2JHQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JHQ from S2C, [Save to disk] Re-refined 2jhq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JHQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JHQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JHQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jhq] [2jhq_A] SWISS-PROT database: [Q9KPK8] Domain organization of [UNG_VIBCH] by SWISSPFAM Domains found in 2JHQ: [UDG] [UreE_C ] by SMART

Other resources with information on 2JHQ

Community annotation for 2JHQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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