2JI8	Lyase	date	Feb 26, 2007
title	X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex With Coa
authors	C.L.Berthold, C.G.Toyota, P.Moussatche, M.D.Wood, F.Leeper, N.G.J.Richards, Y.Lindqvist
compound		source
Molecule: Oxalyl-Coa Decarboxylase Chain: A, B Synonym: Oxalyl-Coenzymea Decarboxylase Ec: 4.1.1.8 Engineered: Yes		Organism_scientific: Oxalobacter Formigenes Organism_taxid: 847 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet9a
symmetry	Space Group: P 31 2 1	R_factor 0.189 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 127.569 127.569 152.035 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	ADP, FYN, MG, PGE, TPP	enzyme	Lyase E.C.4.1.1.8 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystallographic snapshots of oxalyl-CoA decarboxylase give insights into catalysis by nonoxidative ThDP-dependent decarboxylases., Berthold CL, Toyota CG, Moussatche P, Wood MD, Leeper F, Richards NG, Lindqvist Y, Structure. 2007 Jul;15(7):853-61. PMID:17637344

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk] Biological Unit Coordinates (2ji8.pdb1.gz) 357 Kb LPC: Ligand-Protein Contacts for 2JI8 CSU: Contacts of Structural Units for 2JI8 Likely Quarternary Molecular Structure file(s) for 2JI8 Structure Factors (790 Kb) Retrieve 2JI8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JI8 from S2C, [Save to disk] Re-refined 2ji8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JI8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JI8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JI8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ji8_A] [2ji8_B] [2ji8] SWISS-PROT database: [P40149] Domain organization of [OXC_OXAFO] by SWISSPFAM

Other resources with information on 2JI8

Community annotation for 2JI8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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