2JIC Hydrolase date Feb 27, 2007
title High Resolution Structure Of Xylanase-II From One Micron Bea Experiment
authors R.Moukhametzianov, M.Burghammer, P.C.Edwards, S.Petitdemange, D. M.Fransen, G.F.Schertler, C.Riekel
compound source
Molecule: Xylanase-II
Chain: A
Ec: 3.2.1.8
Organism_scientific: Trichoderma Longibrachiatum
Organism_taxid: 5548
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.570 38.830 57.340 90.00 110.61 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProtein crystallography with a micrometre-sized synchrotron-radiation beam., Moukhametzianov R, Burghammer M, Edwards PC, Petitdemange S, Popov D, Fransen M, McMullan G, Schertler GF, Riekel C, Acta Crystallogr D Biol Crystallogr. 2008 Feb;64(Pt 2):158-66. Epub 2008, Jan 16. PMID:18219115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (2jic.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 2JIC
  • Likely Quarternary Molecular Structure file(s) for 2JIC
  • Structure Factors (208 Kb)
  • Retrieve 2JIC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JIC from S2C, [Save to disk]
  • Re-refined 2jic structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JIC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JIC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JIC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jic] [2jic_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2JIC
  • Community annotation for 2JIC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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