2JIV Transferase date Jul 02, 2007
title Crystal Structure Of Egfr Kinase Domain T790m Mutation In Co Hki-272
authors C.H.Yun, K.E.Mengwasser, A.V.Toms, Y.Li, M.S.Woo, H.Greulich, K. M.Meyerson, M.J.Eck
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A, B
Fragment: Kinase Domain, Residues 695-1022
Synonym: Receptor Tyrosine-Protein Kinase Erbb-1
Ec: 2.7.1.112, 2.7.10.1
Engineered: Yes
Mutation: Yes
Other_details: Egfr 696-1022 T790m
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacg2t
Other_details: Egfr 696-1022 T790m
symmetry Space Group: P 1 21 1
R_factor 0.251 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.087 98.989 73.326 90.00 109.94 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand CL, HKI enzyme Transferase E.C.2.7.1.112 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe T790M mutation in EGFR kinase causes drug resistance by increasing the affinity for ATP., Yun CH, Mengwasser KE, Toms AV, Woo MS, Greulich H, Wong KK, Meyerson M, Eck MJ, Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):2070-5. Epub 2008 Jan 28. PMID:18227510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (2jiv.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (2jiv.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2JIV
  • CSU: Contacts of Structural Units for 2JIV
  • Likely Quarternary Molecular Structure file(s) for 2JIV
  • Structure Factors (127 Kb)
  • Retrieve 2JIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JIV from S2C, [Save to disk]
  • Re-refined 2jiv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JIV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JIV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jiv] [2jiv_B] [2jiv_A]
  • SWISS-PROT database: [P00533]
  • Domain organization of [EGFR_HUMAN] by SWISSPFAM
  • Domain found in 2JIV: [TyrKc ] by SMART
  • Other resources with information on 2JIV
  • Community annotation for 2JIV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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