2JK4	Transport	date	Aug 15, 2008
title	Structure Of The Human Voltage-Dependent Anion Channel
authors	M.Bayrhuber, T.Meins, M.Habeck, S.Becker, K.Giller, S.Villinger, C.Vonrhein, C.Griesinger, M.Zweckstetter, K.Zeth
compound		source
Molecule: Voltage-Dependent Anion-Selective Channel Protein 1; Chain: A Fragment: Residues 2-283 Synonym: Voltage-Dependent Anion Channel Isoform 1, Vdac-1, Hvdac1, Outer Mitochondrial Membrane Protein Porin 1, Plasmalemmal Porin, Porin 31hl, Porin 31hm, Human Vdac; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 32 2 1	R_factor 0.3250 R_Free 0.3873
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.990 77.990 167.040 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	4.10 Å
Gene Ontology	Chain Function Process Component A voltage-gated anion channel ...
Primary reference	Structure of the human voltage-dependent anion channel., Bayrhuber M, Meins T, Habeck M, Becker S, Giller K, Villinger S, Vonrhein C, Griesinger C, Zweckstetter M, Zeth K, Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15370-5. Epub 2008 Oct 1. PMID:18832158

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (2jk4.pdb1.gz) 39 Kb CSU: Contacts of Structural Units for 2JK4 Likely Quarternary Molecular Structure file(s) for 2JK4 Structure Factors (34 Kb) Retrieve 2JK4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JK4 from S2C, [Save to disk] Re-refined 2jk4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JK4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JK4

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JK4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jk4_A] [2jk4] SWISS-PROT database: [P21796] Domain organization of [VDAC1_HUMAN] by SWISSPFAM

Other resources with information on 2JK4

Community annotation for 2JK4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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