2JKM Transferase date Aug 28, 2008
title Focal Adhesion Kinase Catalytic Domain In Complex With Bis-A Pyrimidine Inhibitor
authors D.Lietha, M.J.Eck
compound source
Molecule: Focal Adhesion Kinase 1
Chain: A
Fragment: Kinase Domain, Residues 411-686
Synonym: Pp125fak
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacg2t
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.058 45.602 66.440 90.00 95.39 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand BII enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the FAK kinase in complex with TAE226 and related bis-anilino pyrimidine inhibitors reveal a helical DFG conformation., Lietha D, Eck MJ, PLoS ONE. 2008;3(11):e3800. Epub 2008 Nov 24. PMID:19030106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2jkm.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2JKM
  • CSU: Contacts of Structural Units for 2JKM
  • Likely Quarternary Molecular Structure file(s) for 2JKM
  • Structure Factors (143 Kb)
  • Retrieve 2JKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JKM from S2C, [Save to disk]
  • Re-refined 2jkm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JKM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JKM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jkm] [2jkm_A]
  • SWISS-PROT database: [Q00944]
  • Domain organization of [FAK1_CHICK] by SWISSPFAM
  • Domain found in 2JKM: [TyrKc ] by SMART
  • Other resources with information on 2JKM
  • Community annotation for 2JKM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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