2JMD Ligase date Nov 02, 2006
title Solution Structure Of The Ring Domain Of Human Traf6
authors P.Mercier, M.J.Lewis, D.D.Hau, L.F.Saltibus, W.Xiao, L.Spyracopou
compound source
Molecule: Tnf Receptor-Associated Factor 6
Chain: A
Fragment: Ring-Type Domain, Residues 66-124
Synonym: Interleukin 1 Signal Transducer, Ring Finger Prote Htraf6;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Traf6, Rnf85
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl23de3
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure, interactions, and dynamics of the RING domain from human TRAF6., Mercier P, Lewis MJ, Hau DD, Saltibus LF, Xiao W, Spyracopoulos L, Protein Sci. 2007 Apr;16(4):602-14. Epub 2007 Feb 27. PMID:17327397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (799 Kb) [Save to disk]
  • Biological Unit Coordinates (2jmd.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 2JMD
  • CSU: Contacts of Structural Units for 2JMD
  • Original NMR restraints for 2JMD from PDB
  • Retrieve 2JMD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JMD from S2C, [Save to disk]
    • View 2JMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JMD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JMD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jmd_A] [2jmd]
  • SWISS-PROT database: [Q9Y4K3]
  • Domain organization of [TRAF6_HUMAN] by SWISSPFAM
  • Domain found in 2JMD: [RING ] by SMART
    • Other resources with information on 2JMD
  • Community annotation for 2JMD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science