2JNI Antimicrobial Protein date Jan 25, 2007
title Spatial Structure Of Antimicrobial Peptide Arenicin-2 In Aqu Solution
authors T.V.Ovchinnikova, Z.O.Shenkarev, K.D.Nadezhdin, S.V.Balandin, M. I.A.Kudelina, E.I.Finkina, V.N.Kokryakov, A.S.Arseniev
compound source
Molecule: Arenicin-2
Chain: A
Engineered: Yes
 Organism_scientific: Arenicola Marina
Organism_common: Lugworm
Organism_taxid: 6344
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl-21 (De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet
methodSolution NMR
Primary referenceRecombinant expression, synthesis, purification, and solution structure of arenicin., Ovchinnikova TV, Shenkarev ZO, Nadezhdin KD, Balandin SV, Zhmak MN, Kudelina IA, Finkina EI, Kokryakov VN, Arseniev AS, Biochem Biophys Res Commun. 2007 Aug 17;360(1):156-62. Epub 2007 Jun 14. PMID:17585874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2jni.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 2JNI
  • Original NMR restraints for 2JNI from PDB
  • Retrieve 2JNI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JNI from S2C, [Save to disk]
    • View 2JNI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JNI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JNI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jni_A] [2jni]
  • SWISS-PROT database: [Q5SC59]
  • Domain organization of [ANN2_AREMA] by SWISSPFAM
    • Other resources with information on 2JNI
  • Community annotation for 2JNI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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