2JO0	Viral Protein	date	Feb 17, 2007
title	The Solution Structure Of The Monomeric Species Of The C Ter Domain Of The Ca Protein Of Hiv-1
authors	L.A.Alcaraz, M.Del Alamo, F.N.Barrera, M.G.Mateu, J.L.Neira
compound		source
Molecule: Gag-Pol Polyprotein Chain: A Fragment: Sequence Database Residues 278-363 Synonym: Pr160gag-Pol Ec: 3.4.23.16 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Gag-Pol Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Vector Expression_system_vector: Pet21b
method	Solution NMR
ligand		enzyme	Hydrolase E.C.3.4.23.16 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Flexibility in HIV-1 Assembly Subunits: Solution Structure of the Monomeric C-Terminal Domain of the Capsid Protein., Alcaraz LA, Del Alamo M, Barrera FN, Mateu MG, Neira JL, Biophys J. 2007 Aug 15;93(4):1264-76. Epub 2007 May 25. PMID:17526561

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (665 Kb) [Save to disk] Biological Unit Coordinates (2jo0.pdb1.gz) 23 Kb CSU: Contacts of Structural Units for 2JO0 Original NMR restraints for 2JO0 from PDB Retrieve 2JO0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JO0 from S2C, [Save to disk]

View 2JO0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JO0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JO0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jo0] [2jo0_A] SWISS-PROT database: [P35963] Domain organization of [POL_HV1Y2] by SWISSPFAM

Other resources with information on 2JO0

Community annotation for 2JO0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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