2JO9 Ligase date Mar 01, 2007
title Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr Virus Membrane Protein 2a Derived Peptide Eeppppyed
authors M.J.Macias, A.Z.Shaw, P.Martin-Malpartida, B.Morales, L.Ruiz, X.R Espain, F.Yraola, M.Royo
compound source
Molecule: Itchy E3 Ubiquitin Protein Ligase
Chain: A
Fragment: Ww 3 Domain, Sequence Database Residues 399-432
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Itch
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Vector
Expression_system_vector: Petm30

Molecule: Latent Membrane Protein 2
Chain: B
Fragment: Sequence Database Residues 54-62
Synonym: Terminal Protein
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Syntheized. The S Of The Peptide Is Naturally Found In Epstein-Barr Virus.
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceNMR structural studies of the ItchWW3 domain reveal that phosphorylation at T30 inhibits the interaction with PPxY-containing ligands., Morales B, Ramirez-Espain X, Shaw AZ, Martin-Malpartida P, Yraola F, Sanchez-Tillo E, Farrera C, Celada A, Royo M, Macias MJ, Structure. 2007 Apr;15(4):473-83. PMID:17437719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (2jo9.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2JO9
  • Original NMR restraints for 2JO9 from PDB
  • Retrieve 2JO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JO9 from S2C, [Save to disk]
  • View 2JO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JO9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JO9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jo9] [2jo9_A] [2jo9_B]
  • SWISS-PROT database: [Q8C863] [P13285]
  • Domain organization of [ITCH_MOUSE] [LMP2_EBVB9] by SWISSPFAM
  • Domain found in 2JO9: [WW ] by SMART
  • Other resources with information on 2JO9
  • Community annotation for 2JO9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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