2JPM Antimicrobial Protein date May 15, 2007
title Lactococcin G-B In Tfe
authors P.Rogne, G.Fimland, J.Nissen-Meyer, P.E.Kristiansen
compound source
Molecule: Bacteriocin Lactococcin-G Subunit Beta
Chain: A
Engineered: Yes
 Organism_scientific: Lactococcus Lactis
Organism_taxid: 1358
Strain: Lmgt 2081
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_variant: Ril (De3) Plyss
Expression_system_vector_type: Vector
Expression_system_vector: Pgev2
methodSolution NMR
note 2JPM is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of the two peptides that constitute the two-peptide bacteriocin lactococcin G., Rogne P, Fimland G, Nissen-Meyer J, Kristiansen PE, Biochim Biophys Acta. 2007 Dec 15;. PMID:18187052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (227 Kb) [Save to disk]
  • Biological Unit Coordinates (2jpm.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2JPM
  • Original NMR restraints for 2JPM from PDB
  • Retrieve 2JPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JPM from S2C, [Save to disk]
    • View 2JPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JPM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JPM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jpm_A] [2jpm]
  • SWISS-PROT database: [P36962]
  • Belongs to the lactococcin g (lactococcin g) family according to TCDB.
  • Domain organization of [LCGB_LACLA] by SWISSPFAM
    • Other resources with information on 2JPM
  • Community annotation for 2JPM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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