2JQ7 Ribosome Antibiotic date May 30, 2007
title Model For Thiostrepton Binding To The Ribosomal L11-Rna
authors H.R.A.Jonker, S.Ilin, S.K.Grimm, J.Woehnert, H.Schwalbe
compound source
Molecule: 50s Ribosomal Protein L11
Chain: A
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Rplk
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a

Molecule: Ribosomal Rna
Chain: B
Fragment: L11 Binding Domain, Residues 1051-1108
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Other_details: In Vitro Transcribed Rna Construct.

Molecule: Thiostrepton
Chain: C

Organism_scientific: Streptomyces Azureus
Organism_taxid: 146537
methodSolution NMR
ligand BB9, DBU, DCY, DHA, MH6, NH2, QUA, TS9 enzyme
note 2JQ7 supersedes 2NYO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceL11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy., Jonker HR, Ilin S, Grimm SK, Wohnert J, Schwalbe H, Nucleic Acids Res. 2007;35(2):441-54. Epub 2006 Dec 14. PMID:17169991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (401 Kb) [Save to disk]
  • Biological Unit Coordinates (2jq7.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2JQ7
  • CSU: Contacts of Structural Units for 2JQ7
  • Retrieve 2JQ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JQ7 from S2C, [Save to disk]
  • View 2JQ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JQ7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JQ7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jq7_B] [2jq7_C] [2jq7_A] [2jq7]
  • SWISS-PROT database: [P29395] [P0C8P8]
  • Domain organization of [RL11_THEMA] [THCL_STRAJ] by SWISSPFAM
  • Domain found in 2JQ7: [RL11 ] by SMART
  • Other resources with information on 2JQ7
  • Community annotation for 2JQ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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