2JR4 Rna date Jun 20, 2007
title Nmr Solution Structure Of The Anticodon Of E.Coli Trna-Val3 Modifications
authors F.A.P.Vendeix, A.Dziergowska, E.M.Gustilo, W.D.Graham, B.Sproat, A.Malkiewicz, P.F.Agris
compound source
Molecule: 5'-R(Cpcpupcpcpcpupupapcpapapgpgpa 3';
Chain: A
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Primary referenceAnticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding., Vendeix FA, Dziergowska A, Gustilo EM, Graham WD, Sproat B, Malkiewicz A, Agris PF, Biochemistry. 2008 Jun 10;47(23):6117-29. Epub 2008 May 13. PMID:18473483
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (2jr4.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2JR4
  • Original NMR restraints for 2JR4 from PDB
  • Retrieve 2JR4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JR4 from S2C, [Save to disk]
    • View 2JR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JR4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JR4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jr4_A] [2jr4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2JR4
  • Community annotation for 2JR4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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