2JS9 Antimicrobial Protein date Jul 02, 2007
title Structure Of Caenopore-5 (81 Pro Cis Conformer)
authors J.Mysliwy, J.Grotzinger
compound source
Molecule: Saposin-Like Protein Family Protein 5
Chain: A
Engineered: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Spp-5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Plasmid
Expression_system_plasmid: Pivex2.4a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • channel activity


    • Primary referenceCaenopore-5: the three-dimensional structure of an antimicrobial protein from Caenorhabditis elegans., Mysliwy J, Dingley AJ, Stanisak M, Jung S, Lorenzen I, Roeder T, Leippe M, Grotzinger J, Dev Comp Immunol. 2010 Mar;34(3):323-30. Epub 2009 Nov 26. PMID:19917307
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]
  • Biological Unit Coordinates (2js9.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2JS9
  • Retrieve 2JS9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JS9 from S2C, [Save to disk]
    • View 2JS9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JS9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JS9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2js9] [2js9_A]
  • SWISS-PROT database: [Q86FL8]
  • Domain organization of [Q86FL8_CAEEL] by SWISSPFAM
  • Domain found in 2JS9: [SapB ] by SMART
    • Other resources with information on 2JS9
  • Community annotation for 2JS9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science