2JSB Antimicrobial Protein date Jul 02, 2007
title Solution Structure Of Arenicin-1
authors I.B.Jakovkin, O.Hecht, C.Gelhaus, A.D.Krasnosdembskaya, H.Fedder M.Leippe, J.Groetzinger
compound source
Molecule: Arenicin-1
Chain: A
Fragment: Sequence Database Residues 182-202
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Arenicola Marina
Organism_common: Lugworm
Organism_taxid: 6344
methodSolution NMR
Primary referenceStructure and mode of action of the antimicrobial peptide arenicin., Andra J, Jakovkin I, Grotzinger J, Hecht O, Krasnosdembskaya AD, Goldmann T, Gutsmann T, Leippe M, Biochem J. 2008 Feb 15;410(1):113-22. PMID:17935487
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (2jsb.pdb1.gz) 3 Kb
  • CSU: Contacts of Structural Units for 2JSB
  • Retrieve 2JSB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JSB from S2C, [Save to disk]
    • View 2JSB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JSB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JSB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jsb] [2jsb_A]
  • SWISS-PROT database: [Q5SC60]
  • Belongs to the arenicin (arenicin) family according to TCDB.
  • Domain organization of [ANN1_AREMA] by SWISSPFAM
    • Other resources with information on 2JSB
  • Community annotation for 2JSB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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