2JUE Antibiotic, Plant Protein date Aug 23, 2007
title Solution Structure Of The All-D Kalata B1
authors N.L.Daly, L.Sando, D.Craik
compound source
Molecule: Kalata-B1
Chain: A
Fragment: Residues 93-121
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: D-Amino Acids
methodSolution NMR
ligand DAR, DCY, DGL, DLE, DPR, DSG, DSN, DTH, DTR, DVA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Synthetic mirror image of kalata B1 reveals that cyclotide activity is independent of a protein receptor., Sando L, Henriques ST, Foley F, Simonsen SM, Daly NL, Hall KN, Gustafson KR, Aguilar MI, Craik DJ, Chembiochem. 2011 Nov 4;12(16):2456-62. doi: 10.1002/cbic.201100450. Epub 2011, Sep 16. PMID:21928440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2jue.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 2JUE
  • CSU: Contacts of Structural Units for 2JUE
  • Original NMR restraints for 2JUE from PDB
  • Retrieve 2JUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JUE from S2C, [Save to disk]
    • View 2JUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JUE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JUE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jue] [2jue_A]
  • SWISS-PROT database: [P56254]
  • Belongs to the cyclotide (cyclotide) family according to TCDB.
  • Domain organization of [KAB1_OLDAF] by SWISSPFAM
    • Other resources with information on 2JUE
  • Community annotation for 2JUE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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