2JUP Transcription date Sep 01, 2007
title Fbp28ww2 Domain In Complex With The Pplipppp Peptide
authors X.Ramirez-Espain, L.Ruiz, P.Martin-Malpartida, H.Oschkinat, M.J.
compound source
Molecule: Transcription Elongation Regulator 1
Chain: W
Fragment: Ww 2 Domain, Sequence Database Residues 430-466
Synonym: Tata Box-Binding Protein- Associated Factor 2s, Transcription Factor Ca150, P144, Formin- Binding Protein 2
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Tcerg1, Taf2s
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Petm30

Molecule: Formin-1
Chain: P
Fragment: Sequence Database Residues, 881-888
Synonym: Limb Deformity Protein
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: The Authors State That The Peptide Was Chemi Synthesized And The Sequence Corresponds To The Mouse Formi Protein.
methodSolution NMR
Primary referenceStructural Characterization of a New Binding Motif and a Novel Binding Mode in Group 2 WW Domains., Ramirez-Espain X, Ruiz L, Martin-Malpartida P, Oschkinat H, Macias MJ, J Mol Biol. 2007 Nov 9;373(5):1255-68. Epub 2007 Aug 29. PMID:17915251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (2jup.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2JUP
  • Original NMR restraints for 2JUP from PDB
  • Retrieve 2JUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JUP from S2C, [Save to disk]
  • View 2JUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JUP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JUP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jup] [2jup_P] [2jup_W]
  • SWISS-PROT database: [Q05860] [Q8CGF7]
  • Domain organization of [FMN1_MOUSE] [TCRG1_MOUSE] by SWISSPFAM
  • Domain found in 2JUP: [WW ] by SMART
  • Other resources with information on 2JUP
  • Community annotation for 2JUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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